The discovery of Gramicidin S is considered to be the outcome of the intellectual transformation of Russian biologist G.F. Gause from simply a biologist to a researcher of antibiotics. Different historical conditions of this change as well as the development of experimental biology itself at this time are analysed in detail. The meaning of Gause's occupation of a new 'niche' in soviet science for the fate of Russian post-war genetics is defined as well.

Highly idealized models, such as the Hawk-Dove game, are pervasive in biological theorizing. We argue that the process and motivation that leads to the introduction of various idealizations into these models is not adequately captured by Michael Weisberg’s taxonomy of three kinds of idealization. Consequently, a fourth kind of idealization is required, which we call hypothetical pattern idealization. This kind of idealization is used to construct models that aim to be explanatory but do not aim to be explanations.

In this book, Nugayev makes a clear case against Kuhnian and Lakatosian models. For him the origin of scientific revolutions lies in the clash of theories which are already mature and have triumphed in their respective spheres of action.

Johanna Knapstein,1 Daniel Grimm,1 Marcus A Wörns,1 Peter R Galle,1 Hauke Lang,2 Tim Zimmermann111st Department of Internal Medicine, Johannes Gutenberg-University, Mainz, Germany; 2Department of General, Visceral and Transplantation Surgery, Johannes Gutenberg-University, Mainz, GermanyIntroduction: Hepatitis C virus reinfection occurs universally after liver transplantation, with accelerated cirrhosis rates of up to 30% within 5 years after liver transplantation. Dual antiviral therapy with pegylated interferon-2a and ribavirin only reaches sustained virological response rates of ~30% after liver transplantation. With the approval of viral NS3/4A (...) protease inhibitors telaprevir, boceprevir, and simeprevir and the NS5B polymerase inhibitor sofosbuvir, combination therapy offers new therapeutic options for HCV-infected patients, resulting in considerably higher sustained virological response rates in the nontransplant setting. Case presentation: We report three cases of TVR-based triple antiviral therapy in HCV genotype 1 reinfected patients after liver transplantation, of whom a 57-year-old Caucasian female and a 43-year-old Caucasian male were therapy naïve, and a 49-year-old Caucasian male patient was pretreated ineffectively. After 4 weeks of therapy, viral load decreased one to three log10 and became negative in weeks 6 to 8 in the therapy naïve patients. The pretreated patient showed a negative viral load in week 4. TVR was administered over 12 weeks, 750 mg thrice daily. Doses of immunosuppression with cyclosporine were reduced four to six fold. Initial peg-IFN and RBV doses ranged from 135–180 µg/week and 800–1,200 mg/day, according to the patient's body weight. Doses of peg-IFN and RBV were adapted to 90–135 µg/week and 400–800 mg/day after 2 to 12 weeks of protease inhibitor therapy. Dual therapy was continued for 36 weeks with total treatment duration of 48 weeks in the therapy naïve patients leading to a sustained virological response 12 weeks after the end of therapy. In the pretreated patient a breakthrough was detected in week 24 and therapy was discontinued. Overall, antiviral therapy was well tolerated. Side effects included dysgeusia and anemia leading to erythropoietin application and blood transfusions. Conclusion: This case series emphasizes that triple therapy with TVR is an efficient treatment for therapy naïve HCV genotype 1 reinfected patients after liver transplantation. But therapeutic options for pretreated patients require improvement. Keyword: cyclosporine, interferon, ribavirin, hepatitis C, protease inhibitor. (shrink)

A partir de la divergencia de M. Foucault con Th. Hobbes con respecto a la guerra como principio y fundamento del poder, se muestra la importancia de esa diferencia conceptual para los análisis políticos contemporáneos. Foucault sostiene que, en las sociedades modernas de Occidente, la comunidad política, y más precisamente la política misma, ha sido el terreno de la guerra librada por otros medios. Por extensión, esta tesis significa invertir el principio de von Clausewitz; a saber, que la guerra es (...) la continuación de la política por otros medios. On the basis of the difference between M. Foucault and Th. Hobbes regarding war as a principle and foundation of power, the article shows the importance of this conceptual difference for contemporary political analyses. Foucault argues that in modern Western societies, the political community and, more specifically, politics itself, has been the space of a war waged by other means. By extension, this thesis entails the inversion of von Clausewitz's principle, namely, that war is the continuation of politics by other means. A partir da divergência de M. Foucault com Th. Hobbes sobre a guerra como princípio e fundamento do poder, mostra-se a importância dessa diferença conceitual para as análises políticas contemporâneas. Foucault sustenta que, nas sociedades modernas do Ocidente, a comunidade política, e mais precisamente a política em si, tem sido o terreno da guerra travada por outros meios. Por extensão, esta tese significa inverter o princípio de von Clausewitz; a saber, que a guerra é a continuação da política por outros meios. (shrink)

The problem, of man falls into a category of problems of human knowledge that are both ‘eternal’ and ever new. Countless legends, myths, philosophical systems, religious doctrines, scientific conceptions and fantastic visions have been the fruit of man's ungovernable desire to know himself, to know his essence, his purpose in the world, his fate, his future. Not to mention the ingenious hypotheses and Utopian fantasms, scientific truths and galling mistakes, bold projects and cowardly superstitions handed on by human civilization in (...) its Indefatigable search for the ‘magic crystal’ which would at last reveal man's true nature. All periods have made their contribution In this everlasting quest and all have relied on the few parcels of truth gleaned by humanity at earlier stages of development. Our times, the most dramatic and revolutionary of all, are by no means an exception and can be distinguished from the rest only by the exceptional acuity and urgency of the problem. (shrink)

The dilemma of whether and how to disclose a diagnosis of cancer or of any other terminal illness continues to be a subject of worldwide interest. We present the case of a 62-year-old Japanese woman afflicted with advanced gall bladder cancer who had previously expressed a preference not to be told a diagnosis of cancer. The treating physician revealed the diagnosis to the family first, and then told the patient: "You don't have any cancer yet, but if we don't (...) treat you, it will progress to a cancer". In our analysis, we examine the role of family consent, communication patterns (including ambiguous disclosure), and advance directives for cancer disclosure in Japan. Finally, we explore the implications for Edmund Pellegrino's proposal of "something close to autonomy" as a universal good. (shrink)

Yasha Rohwer and Emma Marris argue there is no prima facie duty to preserve genetic integrity; they contend, rather, that preserving the integrity of specific genomes is only a mean...

The bilingual Philoxenus Glossary drew some of its materials from Festus de Signif. Verb. and occasionally mentions his name. Its Festus glosses have been collected in a Jena dissertation by Dammann. The Abolita Glossary seems to have begun with Festus excerpts. Before we can glean from these two glossaries every available scrap of evidence about Festus, we must try to complete and correct them. For of the Philoxenus Glossary we have practically only one MS., and that of the ninth century. (...) It must have omitted many items and perverted the words of many others. The Abolita Glossary was associated with another, the Abstrusa Glossary , in Spain, and this composite collection passed into Italy. The MSS. are, we may say, only two, and of each a certain number of leaves are missing. The older and better MS. , an uncial codex of the eighth century, was written apparently in Central Italy; the other was written two centuries later at Monte Cassino. They show us Abol. not in its original form, but rearranged in a not too strict alphabetical order . The St. Gall Glossary was compiled from Philox., the composite Abstr.-Abol., and supplies some of those Festus glosses of Philox. and Abol. which are omitted in our MSS. It seems to have been a Bobbio compilation . Our best MS. was written in rude uncials at St. Gall in the eighth century. (shrink)

What sort of epistemic positions are compatible with inquiries driven by interrogative attitudes like wonder and puzzlement? The ignorance norm provides a partial answer: interrogative attitudes directed at a particular question are never compatible with knowledge of the question’s answer. But some are tempted to think that interrogative attitudes are incompatible with weaker positions like belief as well. This paper defends that the ignorance norm is exhaustive. All epistemic positions weaker than knowledge directed at the answer to a question are (...) compatible with having an interrogative attitude towards that question. We offer two arguments for this conclusion. The first is based on considerations about the role of hedging in inquiry. The second is conditional on considerations related to the aim of inquiry as a goal-directed activity. (shrink)

We argue that the de-extinction of the mammoth cannot be ethically grounded by duties to the extinct mammoth, to ecosystem health or to individual organisms in ecosystems missing the mammoth. However, the action can be shown to be morally permissible via the goods it will afford humans, including advances in scientific knowledge, valuable experiences of awe and pleasure, and perhaps improvements to our moral character or behaviour—if and only if suffering is minimal. Finally, we call for empirical research into how (...) the possibility of the technology affects our behaviour or our character to help the debate transcend duelling intuitions. (shrink)

In this article I argue that humans have a pro tanto duty to cognitively enhance some animals threatened with extinction. I will use as a case study a particular set of animals: smaller Australian marsupials. Many of these animals are on the brink of extinction thanks to the introduction of the fox and the domestic cat to the continent of Australia. Ecologists conjecture that these marsupials do not have the behavioural flexibility to cope with these introduced predators. By introducing predators, (...) humans performed a wrong action because it led to the extinction of species and continues to threaten many marsupials species such as woylies, Gilbert's potoroos, numbats and mountain pygmy possums. This wrong action gives rise to an obligation to intervene to prevent further species loss. Traditional means of conservation do not seem sufficient to address this obligation; therefore, there is a duty to cognitively enhance these creatures as soon as the technology is sufficiently researched and safe. (shrink)

Highly idealized models, such as the Hawk-Dove game, are pervasive in biological theorizing. We argue that the process and motivation that leads to the introduction of various idealizations into these models is not adequately captured by Michael Weisberg’s taxonomy of three kinds of idealization. Consequently, a fourth kind of idealization is required, which we call hypothetical pattern idealization. This kind of idealization is used to construct models that aim to be explanatory but do not aim to be explanations.

Within the modeling literature, there is often an implicit assumption about the relationship between a given model and a scientific explanation. The goal of this article is to provide a unified framework with which to analyze the myriad relationships between a model and an explanation. Our framework distinguishes two fundamental kinds of relationships. The first is metaphysical, where the model is identified as an explanation or as a partial explanation. The second is epistemological, where the model produces understanding that is (...) related to the explanation of interest. Our analysis reveals that the epistemological relationships are not always dependent on the metaphysical relationships, contrary to what has been assumed by many philosophers of science. Moreover, we identify several importantly different ways that scientific models instantiate these relationships. We argue that our framework provides novel insights concerning the nature of models, explanation, idealization, and understanding. (shrink)

Part of what makes the environment valuable is its autonomy. There are some who think that any human influence on an environment is necessarily autonomy-compromising because it is a form of human control. In this article, I will assume human influence on the environment necessarily undermines autonomy. However, I will argue, even given this assumption, it is still possible for the intervention to enable autonomy in the long run. My focus is on genetic intervention into organisms, because some might think (...) human influence in these cases cannot dissipate. I argue this is mistaken and, borrowing a concept from botany, I argue genes, even genes inserted into a genome by humans, can “naturalize.” Furthermore, they can function in ways that are autonomy-enabling to the individual and to the system to which the organism belongs. (shrink)

Can one still have understanding in situations that involve the kind of epistemic luck that undermines knowledge? Kvanvig (The value of knowledge and the pursuit of understanding, 2003; in: Haddock A, Miller A, Pritchard D (eds) Epistemic value, 2009a; in: Haddock A, Miller A, Pritchard D (eds) Epistemic value, 2009b) says yes, Prichard (Grazer Philos Stud 77:325–339, 2008; in: O’Hear A (ed) Epistemology, 2009; in: Pritchard D, Millar A, Haddock A (eds) The nature and value of knowledge: three investigations, 2010) (...) say sometimes, DePaul and Grimm (Philos Phenomenol Res 74:498–514, 2007) and Grimm (Br J Philos Sci 57:515–535, 2006; in: Bernecker S, Pritchard D (eds) The Routledge companion to epistemology, 2011), Kvanvig’s critics, say no. The cases put forth by Kvanvig’s critics share a common feature, which seems to drive the intuition that understanding can’t be lucky: the fact that the information that makes up the individual’s understanding comes exclusively from a bad source. I formulate a case that lacks this feature, drawing on the fact that understanding produced from scientific inquiry is often produced by collaboration. I argue that my case provides good evidence that understanding is not a species of knowledge. (shrink)

Many environmental ethicists think evolutionary processes are good or, put differently, that they are morally valuable. Furthermore, many claim this value can be compromised when humans disrupt or cause a break in these processes. In this paper, I argue this account is mistaken. Evolution is not good. Furthermore, evolution cannot be “broken” by mere human involvement. There is no preordained trajectory in evolution; randomness, genetic drift, and historical contingency influence all evolutionary histories. Additionally, to think humans necessarily undermine so-called “natural” (...) processes and turn them artificial is to ignore Vogel (2011, 2015), and insist on pre-Darwinian dualism. There is no morally meaningful distinction between natural selection and artificial selection; they are both simply selection. Furthermore, animals shape their own evolutionary trajectories, their progenies’, and those of other organisms through their intentions and choices—as is illustrated in the theory of niche construction. Human involvement in evolutionary processes does not “break” them nor does it necessarily reduce the value of the end products of those processes. (shrink)

Some conservation biologists invoke the concept of ‘genetic integrity,’ which they generally assume is a good worth preserving without explicit justification. We examine the question of whether or not there is a prima facie duty to preserve genetic integrity in conservation biology. We examine several possible justifications for the potential duty found in the conservation biology literature. We argue, contra a dominant trend of thought in conservation biology, that there is no prima facie duty to preserve genetic integrity and that (...) any moral obligation to preserve genetic integrity in specific cases is merely derivative of other possible duties. (shrink)

Each year, over 200 million people are infected with the malaria parasite, nearly half a million of whom succumb to the disease. Emerging genetic technologies could, in theory, eliminate the burden of malaria throughout the world by intentionally eradicating the mosquitoes that transmit the disease. In this paper, we offer an ethical examination of the intentional eradication of Anopheles gambiae, the main malaria vector of sub-Saharan Africa. In our evaluation, we focus on two main considerations: the benefit of alleviating the (...) malaria burden, and the loss of value that would accompany the eradication of the species. We outline a typology of the different ways in which species are valued or could be valuable, then use that typology to appraise the value of the species in question. We argue that Anopheles gambiae has minor (and redundant) instrumental value, little final subjective value and no objective final value. (shrink)

Speech unfolds over time, and the cues for even a single phoneme are rarely available simultaneously. Consequently, to recognize a single phoneme, listeners must integrate material over several hundred milliseconds. Prior work contrasts two accounts: (a) a memory buffer account in which listeners accumulate auditory information in memory and only access higher level representations (i.e., lexical representations) when sufficient information has arrived; and (b) an immediate integration scheme in which lexical representations can be partially activated on the basis of early (...) cues and then updated when more information arises. These studies have uniformly shown evidence for immediate integration for a variety of phonetic distinctions. We attempted to extend this to fricatives, a class of speech sounds which requires not only temporal integration of asynchronous cues (the frication, followed by the formant transitions 150–350 ms later), but also integration across different frequency bands and compensation for contextual factors like coarticulation. Eye movements in the visual world paradigm showed clear evidence for a memory buffer. Results were replicated in five experiments, ruling out methodological factors and tying the release of the buffer to the onset of the vowel. These findings support a general auditory account for speech by suggesting that the acoustic nature of particular speech sounds may have large effects on how they are processed. It also has major implications for theories of auditory and speech perception by raising the possibility of an encapsulated memory buffer in early auditory processing. (shrink)

Game theory has played a critical role in elucidating the evolutionary origins of social behavior. Sober and Wilson model altruism as a prisoner's dilemma and claim that this model indicates that altruism arose from group selection pressures. Sober and Wilson also suggest that the prisoner's dilemma model can be used to characterize punishment; hence, punishment too originated from group selection pressures. However, empirical evidence suggests that a group selection model of the origins of altruistic punishment may be insufficient. I argue (...) that examining dominance hierarchies and coalition formation in chimpanzee societies suggests that the origins of altruistic punishment may be best captured by individual selection models. I suggest that this shows the necessity of coupling of game-theoretic models with a conception of what our actual social structure may have been like to best model the origins of our own behavior. ‡I would like to thank Zachary Ernst and Emma Marris for their many helpful comments which greatly improved this paper. †To contact the author, please write to: Department of Philosophy, University of Maryland, Skinner Building, College Park, MD 20742; e-mail: [email protected]. (shrink)

1. Traditional conservation biology has focused on two goals: preserving and protecting biodiversity and ecosystem integrity (e.g., Noss, 2001; Soulé, 1985). When species go extinct, this reduces b...

This collection addresses a post-WWII shift in the hierarchy of scientific explanations, where the highest goal moves from reductionism towards some ...

Weight- (WAZ), height- (HAZ), and BMI-for-age (BMIZ) are frequently used to assess malnutrition among children. These measures represent different categories of risk and are usually hypothesized to be affected by distinct factors, despite their inherent relatedness. Life history theory suggests weight should be sacrificed before height, indicating a demonstrable relationship among them. Here we evaluate impact of family composition and household economics on these measures of nutritional status and explore the role of WAZ as a factor in HAZ. Anthropometrics, family (...) demographics, and measures of household economy were collected from Sidama agropastoralist children in a peri-urban village in southwestern Ethiopia (n = 157; 79 girls). Just over half of the sample (50.9%) had z-scores of − 2SD or below on at least one measure, indicating an elevated risk of morbidity/mortality; 30% were at or below − 2SD on two or more measures. We used hierarchical linear regression with random intercept analysis to model WAZ and HAZ. Siblings and crop sales significantly decrease WAZ while electricity, agriculture, and polygyny improve z-scores; however, an interaction between polygyny and siblings indicates negative effects of siblings in polygynous families and positive effects in nonpolygynous ones (adj. R2 = 66.5%). For HAZ, agriculture and electricity are positively associated with z-scores whereas siblings have a negative effect; the interaction term again indicates that effects of siblings vary in polygynous and nonpolygynous families (adj. R2 = 74.2%). A mediation model exploring the role of weight in height outcomes suggests not only that WAZ has direct effects on HAZ but also that effects of electricity and agriculture on HAZ are partially mediated by WAZ. Our findings indicate that WAZ and HAZ are primarily affected by shared variables, but effects of siblings vary by polygyny status. Long-term outcomes (HAZ) among Sidama children would likely benefit from interventions focused on stabilizing WAZ across family members. (shrink)

The concept of explanation is central to scientific practice. However, scientists explain phenomena in very different ways. That is, there are many different kinds of explanation; e.g. causal, mechanistic, statistical, or equilibrium explanations. In light of the myriad kinds of explanation identified in the literature, most philosophers of science have adopted some kind of explanatory pluralism. While pluralism about explanation seems plausible, it faces a dilemma Explanation beyond causation, Oxford University Press, Oxford, pp 39–56, 2018). Either there is nothing that (...) unifies all instances of scientific explanation that makes them count as explanations, or there is some set of unifying features, which seems incompatible with explanatory pluralism. Different philosophers have adopted different horns of this dilemma. Some argue that no unified account of explanation is possible. Others suggest that there is a set of necessary features that can unify all explanations under a single account Explanation beyond causation, Oxford University Press, Oxford, pp 74–95, 2018; Strevens in Depth: an account of scientific explanation, Harvard University Press, Cambridge, 2008). In this paper, we argue that none of the features identified by existing accounts of explanation are necessary for all explanations. However, we argue that a unified account can still be provided that accommodates pluralism. This can be accomplished, we argue, by reconceiving of scientific explanation as a cluster concept: there are multiple subsets of features that are sufficient for providing an explanation, but no single feature is necessary for all explanations. Reconceiving of explanation as a cluster concept not only accounts for the diversity of kinds of explanations, but also accounts for the widespread disagreement in the explanation literature and enables explanatory pluralism to avoid Pincock’s dilemma. (shrink)